[BioC] spotted SNP array

kfbargad at ehu.es kfbargad at ehu.es
Tue Jun 5 18:36:04 CEST 2007

Dear list,

I am thinking of using RMA to analyse glass-spotted SNP arrays and 
extract copy number information. I believe "Oligo" package does this 
for affy chips. Do you think I could use "makePlatformDesign" package 
to create a custom cdf file for these chips and then use "Oligo" 
for performing RMA? Is it senseless to perform RMA on a chip that has 
only about 3000-4000 probes?

Thanks in advance for your suggestions


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