[BioC] Annotations dealing with "removed" refseq record

Sean Davis sdavis2 at mail.nih.gov
Sat Jun 9 03:26:00 CEST 2007

nli at fhcrc.org wrote:
> Hi, Francois,
> If I remember correctly, we had a hard time finding up-to-date annotations from
> Agilent. The annotation file we downloaded from Agilent was out-of-date. We
> still update the annotation packages for each release, but probeset to gene
> mapping (recorded in mgug4122aACCNUM) hasn't been updated for quite a long
> time. In another word, we only update the annotations for the genes. So, if
> mgug4122aACCNUM is wrong/deprecated for a probeset, then other annotations for
> this probeset will be incorrect.
> Could you please post the link to the up-to-date annotation file? We can
> re-build the annotation packages base on them. Your help will be highly
> appreciated.
I think this is it, but they are still pretty old (many from fall, 2006):



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