[BioC] Question about htmlReport() in GOstats package
sfalcon at fhcrc.org
Sun Jun 10 00:00:56 CEST 2007
"Zhu, Dongxiao" <DOZ at stowers-institute.org> writes:
> Hi there,
> By calling htmlReport() in GOstats pacakge, we will have a html file
> listing GO term and many attributes, such as p-value, count etc. The
> the last column of the html page provide hyperlink to the GO term in
> GO website. I am wondering how could generate a similiar html report
> with the hyperlinks in last column link to local html files? Each of
> these local html files name after a GO term.
I'm not sure I understand the question. If you want an offline
version of the report, perhaps you can use your browser or a tool like
wget to produce a local mirror?
If you want to customize the behavior of htmlReport, then you should
take a look at the code for the function (start by downloading the
source package for GOstats and Category). It shouldn't be too
difficult to create a similar function that makes links as you want.
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center
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