[BioC] justPlier() on UNIX

Pickard, Mike Michael.Pickard at mpi.com
Wed Jun 13 17:46:40 CEST 2007


I'm interested in comparing PLIER-summarized Affymetrix GeneChip data to
RMA-summarized data.  I plan to use v1.4.0 of the plier package, and I'm
running it on a SUN box (sparc-sun-solaris2.10).

I was searching the Bioconductor mailing list archives, and I came
across a message (dated November 22, 2006) that mentioned that different
results were obtained when using justPlier (plier package v1.4.0) on a
UNIX machine compared to using it on a PC or Linux machine.  There was
no subsequent response to this message listed in the archives.  

Has anyone else encountered a similar problem?  If so, are there any
known solutions (e.g. changing default parameters in justPlier)?   I
would like to avoid summarizing my data on a PC due to the large number
of CEL files that make up this experiment.

Thank you very much!

Michael Pickard

This e-mail, including any attachments, is a confidential business communication, and may contain information that is confidential, proprietary and/or privileged.  This e-mail is intended only for the individual(s) to whom it is addressed, and may not be saved, copied, printed, disclosed or used by anyone else.  If you are not the(an) intended recipient, please immediately delete this e-mail from your computer system and notify the sender.  Thank you.

More information about the Bioconductor mailing list