[BioC] justPlier() on UNIX
Michael.Pickard at mpi.com
Wed Jun 13 17:46:40 CEST 2007
I'm interested in comparing PLIER-summarized Affymetrix GeneChip data to
RMA-summarized data. I plan to use v1.4.0 of the plier package, and I'm
running it on a SUN box (sparc-sun-solaris2.10).
I was searching the Bioconductor mailing list archives, and I came
across a message (dated November 22, 2006) that mentioned that different
results were obtained when using justPlier (plier package v1.4.0) on a
UNIX machine compared to using it on a PC or Linux machine. There was
no subsequent response to this message listed in the archives.
Has anyone else encountered a similar problem? If so, are there any
known solutions (e.g. changing default parameters in justPlier)? I
would like to avoid summarizing my data on a PC due to the large number
of CEL files that make up this experiment.
Thank you very much!
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