[BioC] Biomart with human genes NCBI 35

Durinck, Steffen (NIH/NCI) [F] durincks at mail.nih.gov
Wed Jun 20 14:55:44 CEST 2007

Dear Marco,

Selecting archived versions is currently only possible using biomaRt in MySQL mode and will become available soon in web service mode.

To see the available archives do:

listMarts(mysql=TRUE, archive=TRUE)

To connect to a previous version (e.g. Ensembl 44) you have to do:

ensembl = useMart("ensembl_mart_44",dataset="hsapiens_gene_ensembl",mysql=TRUE,archive=TRUE)

Use the listDatasets function to see the NCBI version, you'll have to go back to Ensembl 37 to get the NCBI35 build.


-----Original Message-----
From: marco zucchelli [mailto:marco.bioc at gmail.com]
Sent: Tue 6/19/2007 7:12 AM
To: bioconductor
Subject: [BioC] Biomart with human genes NCBI 35
Dear All,

 is it possible to select within biomart other builds for human genes rather
than the current
NCBI36 ?
I would like to get  gene positions according to  NCBI35  but seems that
there is no way to
do that



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