[BioC] normalization across sites

[Weiwei Shi]

Hi,

Suppose that I have two sets of arrays, both of which use the same
platform. My question is, if I have datasets which have been
preprocessed, what's the best way for me to normalize them. Currently
I just scale them sample-wise; but not sure of it.

Otherwise, should I go back to .CEL file? But how to proceed from there?

Thanks,

-- 
Weiwei Shi, Ph.D
Research Scientist
GeneGO, Inc.

"Did you always know?"
"No, I did not. But I believed..."
---Matrix III