[BioC] Failing to install genefilter-1.12.0

[Benilton Carvalho]

Hi everyone,

I just built from the source R-2.4.1, so it's a "brand new" installation.

Then:

source("http://www.bioconductor.org/bioLite.R")
biocLite(c("simpleaffy", "affyPLM", "RColorBrewer"))

everything goes almost OK: I can't get genefilter to install (therefore I 
don't have simpleaffy)

It's a long output that I get, but it starts with:

In file included from 
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/vector:67,
                  from half_range_mode.cpp:4:
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/stl_algobase.h:64:28: 
bits/c++config.h: No such file or directory
In file included from 
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/vector:68,
                  from half_range_mode.cpp:4:
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: 
error: expected template-name before '<' token
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: 
error: expected `{' before '<' token
/usr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../include/c++/3.4.6/bits/allocator.h:80: 
error: expected unqualified-id before '<' token


Have anyone observed something like this?

thanks,

b.

--

> sessionInfo()
R version 2.4.1 (2006-12-18)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US.iso885915;LC_NUMERIC=C;LC_TIME=en_US.iso885915;LC_COLLATE=en_US.iso885915;LC_MONETARY=en_US.iso885915;LC_MESSAGES=en_US.iso885915;LC_PAPER=en_US.iso885915;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.iso885915;LC_IDENTIFICATION=C

attached base packages:
[1] "stats"     "graphics"  "grDevices" "utils"     "datasets"  "methods"
[7] "base"
>