[BioC] AnnBuilder with custmerized GO annotation

Xinxia Peng xinxia.peng at sbri.org
Wed May 2 01:22:55 CEST 2007

In the particular example, the corresponding protein on GO website is
'ARY2_HUMAN'. It has one associated GO term GO:0004060, the same one as
I got from the example. But the evidence code is 'TAS'. I am wondering
if it is related to the data stored on the bioconductor site, or
something happened along the file parsing or something else.


-----Original Message-----
From: Seth Falcon [mailto:sfalcon at fhcrc.org] 
Sent: Tuesday, May 01, 2007 12:10 PM
To: Xinxia Peng
Cc: John Zhang; bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] AnnBuilder with custmerized GO annotation

"Xinxia Peng" <xinxia.peng at sbri.org> writes:

> Thanks. I thought about it, but I did not find the 'E' in this example

> from GO website:

That looks like a bug of some sort.  The evidence codes should all be
three letters I believe.

> http://www.geneontology.org/GO.evidence.shtml
> Another question is for GOstats: is the evidence code involved in the 
> enrichment analysis?

No, they are not used at present.

+ seth

Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research
Center http://bioconductor.org

More information about the Bioconductor mailing list