[BioC] AnnBuilder with custmerized GO annotation
xinxia.peng at sbri.org
Wed May 2 01:22:55 CEST 2007
In the particular example, the corresponding protein on GO website is
'ARY2_HUMAN'. It has one associated GO term GO:0004060, the same one as
I got from the example. But the evidence code is 'TAS'. I am wondering
if it is related to the data stored on the bioconductor site, or
something happened along the file parsing or something else.
From: Seth Falcon [mailto:sfalcon at fhcrc.org]
Sent: Tuesday, May 01, 2007 12:10 PM
To: Xinxia Peng
Cc: John Zhang; bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] AnnBuilder with custmerized GO annotation
"Xinxia Peng" <xinxia.peng at sbri.org> writes:
> Thanks. I thought about it, but I did not find the 'E' in this example
> from GO website:
That looks like a bug of some sort. The evidence codes should all be
three letters I believe.
> Another question is for GOstats: is the evidence code involved in the
> enrichment analysis?
No, they are not used at present.
Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research
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