[BioC] paired design, LIMMA

Gordon K Smyth smyth at wehi.EDU.AU
Fri May 4 00:53:20 CEST 2007

Dear Lev,

Do _you_ see any problems with the plots?  The idea of Bioconductor software is to provide tools
for you to analyse your own data.  To me your data look perfect.

Best wishes

On Fri, May 4, 2007 1:11 am, Lev Soinov wrote:
> Dear Gordon and List,
> I have now found a way to show my plots regarding barley arrays, http://photo.all-faqs.info/.
> They are:
> - plotMA created with plotMA(fit_pair, array=4)
> - boxplots and a density plot for RMA normalised and raw data
> - MVA plots for RMA normalised data, created with mva.pairs(exprs(temp), log.it=FALSE)
> Could you, please have a look at them and see whether you find anything strange?
> My scripts for the analysis of the data and previous e-mails are below.
> With kind regards,
> Lev.

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