[BioC] bug with AnnBuilder and parser

Nianhua Li nli at fhcrc.org
Wed May 9 20:08:40 CEST 2007

Hi, Gregory,

Could you try invoking ABPkgBuilder directly? Here is a sample script (taken
from your email) for example:

library (AnnBuilder)
data_gb = read.table("probeset_gb.txt" , sep = "\t", header=FALSE, as.is=TRUE)
mybase = file.path("probeset_gb.txt")
mybasetype= "gb"
mydir = getwd()

ABPkgBuilder(baseName= mybase, 
             baseMapType = mybasetype, 
             pkgName = "monPackageAnnoted", 
             pkgPath = mydir, 
             organism = "Homo sapiens", 
             version = "1.0.0", 
             author = list (authors = "Greg_Voisin, Amelie Ouellet", 
                            maintainer = "voisingreg at ...")

You have to modify the maintainer email since it is marked by gmane. If it still
doesn't work, please write back with the output of "sessionInfo()".



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