[BioC] simpleaffy plot error

[Georg Otto]

Dear Bioconductors,

since upgrading to R 2.5 and bioconductor 2.0, the plot.qc.stats
function of simpleaffy returns an error. I attached the transcript of
my session below. Could anybody give me a hint what is going on?

Cheers,

Georg


> Data
AffyBatch object
size of arrays=712x712 features (18 kb)
cdf=Zebrafish (15617 affyids)
number of samples=32
number of genes=506944
annotation=zebrafish
notes=  

> qc<-qc(Data)
> plot(qc)
Error in rbind(c(), (vals[, p3] - vals[, p5])) : 
	invalid subscript


> traceback()
7: rbind(c(), (vals[, p3] - vals[, p5]))
6: .getRatios(object)
5: ratios(x)
4: ratios(x)
3: plot.qc.stats(x, ...)
2: plot(qc)
1: plot(qc)

> sessionInfo()
R version 2.5.0 (2007-04-23) 
x86_64-redhat-linux-gnu 

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] "splines"   "tools"     "stats"     "graphics"  "grDevices" "datasets" 
[7] "utils"     "methods"   "base"     

other attached packages:
zebrafishcdf   simpleaffy   genefilter     survival         affy       affyio 
    "1.16.0"     "2.10.3"     "1.14.1"       "2.31"     "1.14.0"      "1.4.0" 
     Biobase 
    "1.14.0"