[BioC] help on AnnBuilder

Seth Falcon sfalcon at fhcrc.org
Tue May 29 16:48:29 CEST 2007

Pan Zheng <zhpan99 at yahoo.com> writes:
> Hi,
>   I am trying to build an annotation object with AnnBuilder for a
>   GEO object (GPL285). The base is a list of Genbank accessions, and
>   I would like to map them to EntrezGene ID.
>    >

>   When I used:
>   ABPkgBuilder(baseName=myBase, srcUrls=mySrcUrls, baseMapType=c("gb"),
>   pkgPath=myDir, organism="Mus musculus",pkgName = "mouseGPL285",
>   version = "1.1.0",author = list(authors = "myname", maintainer =
>   "myname at myemail.com"), fromWeb = T)

What is the value of myBase?  Have you read the man page for
ABPkgBuilder and specified baseName as it describes?  It think that is
the problem here.

+ seth

Seth Falcon | Computational Biology | Fred Hutchinson Cancer Research Center

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