[BioC] lty argument not recognised in plot function]

Pan Du dupan at northwestern.edu
Thu Sep 6 01:21:02 CEST 2007


Thanks for reporting the problem! Alice.
The current hist method in lumi package was not allowed to change lty
parameters. I have changed  the function and make it user changeable.

Pan Du


On 9/5/07 4:55 PM, "Wolfgang Huber" <huber at ebi.ac.uk> wrote:

> [BioC] lty argument not recognised in plot function
> Data: Wed, 5 Sep 2007 15:07:53 +1200
> Da: Johnstone, Alice <Alice.Johnstone at esr.cri.nz>
> A: <bioconductor at stat.math.ethz.ch>
> 
> Hi
> Trying to produce a histogram with the same line type for each sample
> but it produces the error below:
> 
>> hist(data.lumi,col=cols,lty=1)
> Error in matplot(all.x, all.y, ylab = ylab, xlab = xlab, type = type,  :
> 
>    formal argument "lty" matched by multiple actual arguments
> 
> 
>> sessionInfo()
> R version 2.6.0 Under development (unstable) (2007-08-11 r42469)
> i386-pc-mingw32
> 
> locale:
> LC_COLLATE=English_New Zealand.1252;LC_CTYPE=English_New
> Zealand.1252;LC_MONETARY=English_New
> Zealand.1252;LC_NUMERIC=C;LC_TIME=English_New Zealand.1252
> 
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods
> 
> [8] base
> 
> other attached packages:
>   [1] lumiRatV1_1.3.0        lumi_1.3.29            annotate_1.15.3
> 
>   [4] AnnotationDbi_0.0.88   RSQLite_0.6-0          DBI_0.2-3
> 
>   [7] mgcv_1.3-25            affy_1.15.7
> preprocessCore_0.99.12
> [10] affyio_1.5.8           Biobase_1.15.26
> 
> 
> This has previously worked for me, so has something changed in the devel
> package that I need to alter my script?
> Cheers
> Alice



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