[BioC] affTableAnn error

Richard Friedman friedman at cancercenter.columbia.edu
Tue Sep 11 23:45:54 CEST 2007


Dear Biocondcutor users.

	I have an error in the use of affTableAnn.

 > anntable<-aafTableAnn(probeids[1:22690],"mouse430a2",anncols)
Error in probeids[1:22690] : object is not subsettable

Here is my sessionInfo

 > sessionInfo()
Version 2.3.1 (2006-06-01)
i386-pc-mingw32

attached base packages:
[1] "splines"   "tools"     "methods"   "stats"     "graphics"   
"grDevices"
[7] "utils"     "datasets"  "base"

other attached packages:
      mouse430a2        hgu133a2         annaffy             
KEGG              GO
        "1.12.0"         "1.8.4"         "1.4.1"         
"1.12.0"        "1.12.0"
         moe430a         statmod mouse430a2probe    
mouse430a2cdf           gcrma
        "1.12.1"         "1.2.4"        "1.12.0"         
"1.12.0"         "2.4.1"
     matchprobes           limma            affy           
affyio         Biobase
         "1.4.0"         "2.7.6"        "1.10.0"          
"1.0.0"        "1.10.1"

I would appreciate any suggestions.

Thanks and best wishes,
Rich
  ------------------------------------------------------------
Richard A. Friedman, PhD
Biomedical Informatics Shared Resource
Lecturer
Department of Biomedical Informatics
Educational Coordinator
Center for Computational Biology and Bioinformatics
National Center for Multiscale Analysis of Genomic Networks
Box 95, Room 130BB or P&S 1-420C
Columbia University Medical Center
630 W. 168th St.
New York, NY 10032
(212)305-6901 (5-6901) (voice)
friedman at cancercenter.columbia.edu
http://cancercenter.columbia.edu/~friedman/

In memoriam, John Stewart Williamson



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