[BioC] create CNA object in DNAcopy package with agilent data

Sean Davis sdavis2 at mail.nih.gov
Thu Sep 13 22:48:09 CEST 2007


jhs1jjm at leeds.ac.uk wrote:
> Sean,
>
> Thanks for that. Couldn't get it to work but not too worry as I wouldn't want to
> take credit for writing a function like that and my tutor wouldn't expect it.
> Someone has written some perl code to do it for him but I want to get to grips
> with R. I've tried to decipher what you've done and daresay I can get there
> although in a slightly long winded method. I can bring up the Systematic names
> with the following:
>
> x <- manorm at maGnames@maInfo[,3]
>
> I've had a look at the strsplit help:
>
> ch_loc_split <- strsplit(x,":")
>
> I'll have a look at the rest of the code and functions you've used then get back
> to you. If there's any potential pitfalls for a newbie then by all means let me
> know.
>   

Jim,

What did you try and what didn't work?  Error messages and actual 
commands will help here.

Sean



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