[BioC] copy number for Affy 6.0

Rob Scharpf rscharpf at jhsph.edu
Wed Aug 6 04:29:48 CEST 2008


For the Affy 6.0 platform, I would like to know the default tool for  
obtaining copy number estimates prior to smoothing across loci (raw  
copy number).  If CNAT is the default, is there a command-line  
version of this tool available, or an implementation of a CNAT- 
equivalent in R?



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