[BioC] filtering Illumina data

Lana Schaffer schaffer at scripps.edu
Wed Aug 20 22:09:29 CEST 2008

I have filtered Illumina data from 46,633 probes to 6537 probes
using the Detection Pval.  I used a cutoff of .05 to call
detection across all the arrays.  
Can someone tell me if this is reasonable?
What is a better way of filtering?

Lana Schaffer
The Scripps Research Institute
DNA Array Core Facility
La Jolla, CA 92037
(858) 784-2263
(858) 784-2994
schaffer at scripps.edu 

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