[BioC] Background values

Louisa A Rispoli/AS/EXP/UTIA larispoli at mail.ag.utk.edu
Thu Aug 21 18:10:01 CEST 2008

Hi all-

I have been doing our microarray analysis looking at the QC metrics
provided by SimpleAffy and releazed that all the data produced is based on
the MAS5.0 algorithm. I was wondering if there was any way to get qc
metrics if use RMA or GCRMA, specifically we want to know about the
background values. I have been combing through the vignettes and postings
and cannot locate anything. Any help would be appreciated.



 "If we knew what we were doing, it wouldn't be called Research." - Albert

Louisa Rispoli, Ph.D. Reproductive Physiology
Department of Animal Science
University of Tennessee, Knoxville
A105 Johnson Animal Research and Teaching Unit
1750 Alcoa Highway
Knoxville, TN 37920
phone:(865) 946-1874
fax:(865) 946-1010
email: lrispoli at utk.edu

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