[BioC] similarity between two gene lists with varied length
Claudio.Lottaz at klinik.uni-regensburg.de
Mon Aug 25 09:33:32 CEST 2008
You may want to have a look at the Bioconductor package OrderedList.
It searches for similarities in gene rankings without forcing the user to
specify a threshold, where to cut the lists.
Hope this helps,
From: "Weiwei Shi" [mailto:helprhelp at gmail.com]
Sent: Sunday, August 24, 2008 2:56 AM
To: "r-help at stat.math.ethz.ch" <R-help at stat.math.ethz.ch>
Cc: Bioconductor <bioconductor at stat.math.ethz.ch>
Subject: [BioC] similarity between two gene lists with varied length
a little off-topic:
I am looking for and compare algorithms which can calculate "distance" or "similarity" between two gene lists with different lengths.
Any paper, any implementation in R and any suggestion is welcome!
Weiwei Shi, Ph.D
"Did you always know?"
"No, I did not. But I believed..."
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