[BioC] Importing "Detailed sample annotation" from ArrayExpress DB into R

Markus Schmidberger schmidb at ibe.med.uni-muenchen.de
Wed Aug 27 17:07:20 CEST 2008


I found a working solution:
an <-read.table("E-GEOD-635.sdrf.txt", header=TRUE, sep="\t")


Markus Schmidberger schrieb:
> Hello,
> I am looking for a function or package to import the "Detailed sample 
> annotation" file from the ArrayExpress Database.
> For GEO there is the "GEOquery" package. For ArrayExpress there is the 
> "ArraExpress" package.
> But I am looking for a function to import or read the 
> "xxxxxx.sdrf.txt" file. Is there something?
> Thanks
> Markus

Dipl.-Tech. Math. Markus Schmidberger

Ludwig-Maximilians-Universität München
IBE - Institut für medizinische Informationsverarbeitung,
Biometrie und Epidemiologie
Marchioninistr. 15, D-81377 Muenchen
URL: http://ibe.web.med.uni-muenchen.de 
Mail: Markus.Schmidberger [at] ibe.med.uni-muenchen.de
Tel: +49 (089) 7095 - 4599

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