[BioC] ENSG00000007968 broken

Amanda Miotto a.miotto at griffith.edu.au
Fri Aug 29 03:42:42 CEST 2008


When using
ENSG00000007968
GenomeGraphs breaks, giving the following. Works fine for everything else

> gene = new("Gene", id = "ENSG00000007968",type = "ensembl_gene_id",
biomart = mart)
V1
1
<head>
2
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
3
<meta name="description" content="The European Bioinformatics Institute" />
4
<meta name="author" content="EBI Web Team" />
5
<meta http-equiv="Content-Language" content="en-GB" />
6
<meta http-equiv="Window-target" content="_top" />
7
<meta name="no-email-collection"
content="http://www.unspam.com/noemailcollection/" />
8
<title>EBI Web Application Failure messagee</title>
9
<link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/contents.css"
type="text/css" />
10
<link rel="stylesheet" href="http://www.ebi.ac.uk/inc/css/userstyles.css"
type="text/css" />
11
<script src="http://www.ebi.ac.uk/inc/js/contents.js"
type="text/javascript"></script>
12
<link rel="SHORTCUT ICON" href="http://www.ebi.ac.uk/bookmark.ico" />
13
</head>
14
<body onload="if(navigator.userAgent.indexOf('MSIE') != -1)
document.getElementById('head').allowTransparency = true;">
15
<div class="headerdiv" id="headerdiv" style="position:absolute; z-index:
1;">
16             <iframe src="http://www.ebi.ac.uk/inc/head.html" name="head"
id="head" frameborder="0" marginwidth="0px" marginheight="0px"
scrolling="no" width="100%" style="position:absolute; z-index: 1; height:
57px;"></iframe>
17
</div>
18
<div class="contents" id="contents">
19
<table class="contentspane" id="contentspane" summary="The main content
pane of the page">
20
<tr>
21
<td class="contentsarea" id="contentsarea">
22                                                   <iframe
src="http://www.ebi.ac.uk/errors/failure.html" name="downtime"
frameborder="0" marginwidth="0px" marginheight="0px" scrolling="no"
width="100%" height="320px"></iframe>
23
</td>
24
</tr>
25
</table>
26
<table class="footerpane" id="footerpane" summary="The main footer pane of
the page">
27
<tr>
28
<td colspan ="4" class="footerrow">
29
<div class="footerdiv" id="footerdiv"  style="z-index: 2">
30                                                 <iframe
src="http://www.ebi.ac.uk/inc/foot.html" name="foot" frameborder="0"
marginwidth="0px" marginheight="0px" scrolling="no"  height="22px"
width="100%"  style="z-index:2;"/>
31
</div>
32
</td>
33
</tr>
34
</table>
35
<script src="http://www.ebi.ac.uk/inc/js/footer.js"
type="text/javascript"></script>
36
</div>
37
</body>
38
</html>
Error in getBM(c("structure_gene_stable_id",
"structure_transcript_stable_id",  :
  Number of columns in the query result doesn't equal number of attributes
in query.  This is probably an internal error, please report.





Amanda Miotto
a.miotto at griffith.edu.au

Software Engineer.
Research Computing Services
INFORMATION SERVICES
Griffith University, NATHAN 4111, AUSTRALIA
Phone:  +61 7 37354419  Fax:  +61 7 37356650
Web:    http://eResearch.griffith.edu.au/

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