[BioC] sequence_3utr_start and sequence_3utr_end

Sean Davis seandavi at gmail.com
Fri Dec 12 14:19:38 CET 2008

On Fri, Dec 12, 2008 at 7:58 AM, Javier Díez <jdiezperezj at gmail.com> wrote:
> Hi everyone,
> I have tried this query (just to get the 3 utr coordinates of transcripts of
> a given gene):
> getBM(attributes=c('sequence_3utr_end'),filters='ensembl_gene_id',value="ENSG00000...",mart=mart)
> but I got this error message:
> 1 Query ERROR: caught BioMart::Exception::Usage: Attribute 3utr_end NOT
> Any idea?

Hi, Javi.

Could you provide a reproducible example and the output of sessionInfo()?


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