[BioC] targets frame

Giusy Della Gatta Gatta at icg.cpmc.columbia.edu
Tue Dec 16 17:15:26 CET 2008

Hi everybody,

I am a beginner in the use of R for microarray normalization.
I have Agilent two color microarray data, so I was thinking to use
the Bioconductor LIMMA package to normalize my microarray
by using loess method.

In the first step there is the composition of a targets file.
I did not undestand which kind of Agilent files I have to specify:
they are asking to put in the filename column "the name of the image analysis 
output file" , which are the Agilent image analysis 
output file?

Anybody can help me?

Thank you

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