[BioC] Affymetrix Mogene 1 0 ST
m.stalteri at mail.cryst.bbk.ac.uk
Tue Dec 23 17:18:56 CET 2008
I don't know about the Mouse Gene arrays, but with regard to the Human
Exon arrays, I came across something in one of the Affymetrix manuals
(exon_array_design_technote.pdf) that says the intron/exon control
probe sets are derived from the consensus sequences of the HG-U133 Plus 2
array normalization controls.
For the mouse and rat 3' IVT arrays such as the MOE430 and
RAE230, the normalization controls were the first 100 probe set IDs on the
chip, i.e. probeset IDs 1415670_at to 1415769_at.
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