[BioC] exonmap mysql fehler

Paul Hammer Paul.Hammer at p-t-p.de
Wed Feb 6 22:54:30 CET 2008

dear all,

the function xmapBridge() (package exonmap) worked fine until i did a 
reboot. now always comes this mysql error message:

Fehler in mysqlExecStatement(conn, statement, ...) :  RS-DBI driver: 
(could not run statement: Unknown database 'homo_sapiens_core_47_36i')

when i login to mysql the database with all tables is there.

here my session info:
 > sessionInfo()
R version 2.6.0 (2007-10-03)


attached base packages:
[1] splines   tools     stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
[1] exon.pmcdf_1.1       exonmap_1.4.1        plier_1.8.0
[4] RMySQL_0.6-0         DBI_0.2-4            RColorBrewer_1.0-2
[7] simpleaffy_2.14.05   gcrma_2.10.0         matchprobes_1.10.0
[10] genefilter_1.16.0    survival_2.32        affy_1.16.0
[13] preprocessCore_1.0.0 affyio_1.6.1         Biobase_1.16.2

loaded via a namespace (and not attached):
[1] annotate_1.16.1     AnnotationDbi_1.0.6 rcompgen_0.1-15
[4] RSQLite_0.6-4

have someone an idea???


More information about the Bioconductor mailing list