[BioC] RMAPPER package

Vincent Carey 525-2265 stvjc at channing.harvard.edu
Tue Feb 12 13:28:08 CET 2008

RMAPPER was deprecated because of authentication requirements
that have now been removed.  Some aspects of the MAPPER RPC API
are still being fleshed out and RMAPPER will be restored to the
devel branch in the very near future.

Vince Carey, PhD
Assoc. Prof Med (Biostatistics)
Harvard Medical School
Channing Laboratory - ph 6175252265 fa 6177311541
181 Longwood Ave Boston MA 02115 USA
stvjc at channing.harvard.edu

On Tue, 12 Feb 2008, Johannes Rainer wrote:

> hi,
> i really would like to query the MAPPER database from within R and was very
> happy as i found the RMAPPER package. however, upon installing and loading
> the package i get the message that the package is deprecated (and i also was
> not able to perform queries). has the functionality of RMAPPER be included
> into another package or is there any replacement for the package? what was
> the reason that the package is deprecated?
> i have ChIP-chip data and would like to combine the data with predicted TFBS
> from e.g. the MAPPER database. is there a way to retrieve predicted TFBS for
> a set of genes in R/Bioconductor?
> thanks, jo
> --
> Johannes Rainer, PhD
> Tyrolean Cancer Research Institute
> Innrain 66, 6020 Innsbruck, Austria
> Tel.: +43 512 570485 33
> Email: johannes.rainer at tcri.at
>            johannes.rainer at i-med.ac.at

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