[BioC] can you get end position information from org.Hs.eg
mcarlson at fhcrc.org
Wed Feb 20 17:32:29 CET 2008
Marc Carlson wrote:
> Hi Andrew,
> AFAIK none of the annotation packages has ever had the "end positions"
> available. I am still searching for more information about why we have
> this tradition although I think it may be just because we have always
> provided annotations that are more gene centric rather than more
> transcript centric. I take it from your request that you would like for
> this information to be included as well?
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Hi again Andrew,
Another thing that I always seem to forget about are the CHRLOC
packages. And for some reason in my head I never think of these CHRLOC
packages as part of the set of things that are considered "annotation
packages" either (I guess because they are so specialized). But in your
case you can just use the humanCHRLOC package, and that would get you
all kinds of information about the end points for these genes.
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