[BioC] Is it possible to use RMA on Agilent Data

Francois Pepin fpepin at cs.mcgill.ca
Mon Feb 25 18:12:12 CET 2008

Hi Srini,

Not as a whole, but parts of it can apply.

We actually use the RMA background correction method on our Agilent chips.

The median polish section for probeset summary would not be applicable. 
There are no probesets in Agilent Chips, as each probe stands on its own.


Srinivas Iyyer wrote:
> Dear group, 
> This might be a stupid question. can I use RMA on
> Agilent data. 
> srini
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