[BioC] How can I make genesets for sigpathway

Srinivas Iyyer srini_iyyer_bio at yahoo.com
Fri Feb 29 00:24:28 CET 2008


Dear group, 
in sigPathway package, authors used 
muscle data. 

when one loads:
library(sigPathway)
data(MuscleExample)
I see a "G" object which is nothing but a lit of all
genes. 

> G[1]
[[1]]
[[1]]$src
[1] "GO:0030054"

[[1]]$title
[1] "cell junction"

[[1]]$probes
  [1] "220519_s_at" "206083_at"   "204455_at"  
"212253_x_at"


I get clueless in R with list operations. 

How can I make my own sets mimicking "G" list object. 

Thank you .
srini


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