[BioC] GOstats package - Graphical representation of enriched terms - Help needed

[Srinivas Iyyer]

Dear Sean,
thanks for your reply. is there a vignette/examples
for using GOStats output data in Rgraphviz. may be i
am using wrong key words in searching google. I found
one link in bioconductor that points to a dead link
(http://www2.warwick.ac.uk/fac/sci/moac/currentstudents/peter_cock/r/rgraphviz/)

Thanks
srini


--- Sean Davis <sdavis2 at mail.nih.gov> wrote:

> On Jan 4, 2008 10:56 AM, Srinivas Iyyer
> <srini_iyyer_bio at yahoo.com> wrote:
> 
> > Dear Group,
> > I used hyperGTest using 'conditional' parameter as
> > 'True'.
> >
> > I generated HTML report of all enriched terms.
> There
> > are many such HTML tables that are difficult to
> look
> > at and reason biologically.
> >
> > Are (IS) there any methods (more than one) to
> > represent enriched terms, their P-values
> graphically.
> >
> > Such as drawing GO tree and color enriched term
> nodes
> > OR a heatmap?
> >
> > If so, could you please let me know modules that
> can
> > help me in this task.
> >
> 
> Hi, Srini.  You might look at Rgraphviz.
> 
> Sean
> 



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