[BioC] Question about GOstatsHyperG

[Marc Carlson]

Hi Allen,

In that case you can just use the RefSeq IDs to make a custom package 
for your platform of choice using the SQLForge code inside of the 
AnnotationDbi package.
You can find out more here:

http://www.bioconductor.org/packages/2.3/bioc/html/AnnotationDbi.html

Let me know if you need more information,


    Marc



ss wrote:
> Dear all,
>
> Hi! I have a question about using the function 'hyperGTest' in
> GOstatsHyperG.
> What if I want to find the enriched GO terms based on a set of genes which I
> only know gene symbol, Ensembl Gene ID, and RefSeq ID. Since the array
> is customized and I don't find the corresponding 'annotation' package in
> Bioconductor.
>
> In other words, when making the:
>
> params <- new(...,geneIds, annotation,...), would it possible for me to pass
> "gene symbol"
> or "Ensembl Gene ID", or "RefSeq ID" to "geneIds" and ignore "annotation"
> etc.?
>
> Thanks much!
>
> Allen
>
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