[BioC] problem with GDS2eSet

Youngik Yang yiyang at indiana.edu
Mon Jul 21 23:31:23 CEST 2008

I've got following error messages whenever I run GDS2eSet.

 > eset <- GDS2eSet(gds)

File stored at:
Error in validObject(.Object) :
  invalid class "AnnotatedDataFrame" object:
  AnnotatedDataFrame colnames of data differ from row.names of varMetadata

The following lines were obtained by sessionInfo().

R version 2.7.0 (2008-04-22)


attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods 
[8] base    

other attached packages:
[1] limma_2.9.17   GEOquery_2.2.1 RCurl_0.9-3    Biobase_1.12.2

loaded via a namespace (and not attached):
[1] biclust_0.5       flexclust_0.99-0  grid_2.7.0        lattice_0.17-6  
[5] MASS_7.2-41       modeltools_0.2-15 stats4_2.7.0

Any help will be greatly appreciated.

Thank in advance.

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