[BioC] Dmel. Gene Chip 2 tiling array CDF ; Drosophila melanogaster BDGP Release 5 annotation

Marc Carlson mcarlson at fhcrc.org
Thu Jul 31 02:21:14 CEST 2008

Hi Mythily,

Our annotation packages are currently based upon a combination of 
sources from repositories at NCBI, UCSC, and Flybase to name a few.  We 
do not presently gather any data from the BDGP.  However, if you go the 
the BDGP website, I notice that they will actually refer you to flybase 
for the latest annotations so perhaps what we offer is not far from what 
you had in mind after all?

You can learn more about how to use our annotation packages here.  And 
since it sounds like you want a custom annotation package, you should be 
able to build one by following the instructions in the SQLForge vignette 
at this same website:


Let me know if you have further questions,


mythilyg ganapathi wrote:
> Hello,
> I am a new user of bioconductor. It will be great if it can confirmed whether the CDF and Annotation packages are available for GeneChip® Drosophila Tiling 2.0R Array and BDGP Release 5  annotation, respectively. If they are not available could anybody specify how to integrate them in bioconductor (I am using affyImGUI software)
> Thanks
> Mythily
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