[BioC] Problem loading Affy

[Kasper Daniel Hansen]

We have recently had a discussion about this error on the list. There  
seems to be something broken in the binary builds of bioconductor. To  
install affy do the following: install the latest version of Xcode (v3  
if you are using Leopard) and then install from source by
R> options(pkgType = "source")
R> biocLite("affy")

Kasper

On Jun 23, 2008, at 9:25 AM, Luc Vallieres wrote:

> I am unable to load the Affy package (version 1.18.2) using a MacBook
> Pro (intel core duo processor) with R (version 2.7.0) and
> Bioconductor (2.2). Here is the error message received:
>
> Le chargement a nécessité le package : affylmGUI
> Le chargement a nécessité le package : limma
> Le chargement a nécessité le package : tcltk
> Chargement de Tcl/Tk... terminé
> Le chargement a nécessité le package : affy
> Le chargement a nécessité le package : affyio
> Le chargement a nécessité le package : preprocessCore
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   impossible de charger la bibliothèque partagée '/Library/
> Frameworks/R.framework/Versions/2.7/Resources/library/affy/libs/i386/
> affy.so':
>   dlopen(/Library/Frameworks/R.framework/Versions/2.7/Resources/
> library/affy/libs/i386/affy.so, 6): Library not loaded: /usr/local/
> lib/libintl.3.dylib
>   Referenced from: /Library/Frameworks/R.framework/Versions/2.7/
> Resources/library/affy/libs/i386/affy.so
>   Reason: image not found
> Erreur : le package 'affy' ne peut être chargé
> [Workspace restored from /.RData]
>
> I reinstalled the package several times, but it is still not working.
> Any suggestion?
>
>
> Luc Vallieres, Ph.D.
> Assistant Professor
> Laval University Hospital Research Center
> Quebec, Canada
>
>
>
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