[BioC] How to remove probes from Illumina data?

Johnstone, Alice Alice.Johnstone at esr.cri.nz
Wed Mar 12 06:23:33 CET 2008


I have bead-level data from an Illumina expression experiment.  I have
background corrected and summarised the data, but I need to take the
control probes information out of the ExpressionSetIllumina object, or
remove them from the beadlevel list.  I have tried a few things but they
stop me from using the object any further.  Could someone please suggest
a correct way I could go about this?

Thank you.

Alice Johnstone

PhD Student
Institute of Environmental Science and Research Ltd
Kenepuru Science Centre
34 Kenepuru Drive
PO Box 50-348
New Zealand

Tel:  + 64 4 914-0717
Fax: + 64 4 914-0770

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