[BioC] InterPro Package

Wolfgang Huber huber at ebi.ac.uk
Thu Mar 20 21:09:30 CET 2008

Anguraj Sadanandam scripsit 16/03/2008 23:09:
> Hi Group,
>   Is there a package for querying InterPro database for protein domains?
> Thanks,
> Anguraj

Hi Anguraj

the biomaRt package allows you to query, for example, the Ensembl 
biomart interface, via which you can get, among many other things, 
Interpro Short Description,  Interpro Description and Interpro ID for 
proteins, when you supply it with a list of gene, transcript or protein 

Best wishes

PS Asking more precise questions might give you more and better answers.

Wolfgang Huber  EBI/EMBL  Cambridge UK  http://www.ebi.ac.uk/huber

More information about the Bioconductor mailing list