[BioC] GOstat question

Sean Davis sdavis2 at mail.nih.gov
Fri Mar 21 15:36:23 CET 2008

On Fri, Mar 21, 2008 at 10:21 AM, nicolas servant
<Nicolas.Servant at curie.fr> wrote:
> Thanks for your comment ! I think you're right.
>  Do you know how i can check that ? How can I differentiate the
>  annotations (BP/CC/MF) ?

I think you can get all probes mapping to the BP ontology by doing:

bpprobes <- mget('GO:0008150',hgu133aGO2ALLPROBES)

The GO term 'GO:0008150' is the "root" for the BP ontology.  For your
reference, 'GO:0005510' is the root for the CC ontology and
'GO:0003674' is the root for the MF ontology.

Hope that helps.


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