[BioC] description entry in Biobase makeDataPackage

[Martin Morgan]

Hi James --

"James F. Reid" <reidjf at gmail.com> writes:

> Hello,
>
> when using makeDataPackage to generate a data package I noticed that the
> description entry in the man .Rd file says "place holder 1". Is there a way
> to change this and insert a specific one for each package?

There does not appear to be a way to do this; This has been fixed in
the development version of R and Biobase (2.1.4) which should appear
with biocLite after noon (PST) on Thursday.

Martin

> Many thanks,
> James.
>
> # makeDataPackage example code
> library(Biobase)
>
> data(sample.ExpressionSet)
> ## package created in tempdir()
> s1 <- makeDataPackage(sample.ExpressionSet,
>                       author = "Foo Author",
>                       email = "foo at bar",
>                       packageName = "FooBarPkg",
>                       packageVersion = "1.0.0")
>
> file.show(file.path(s1$pkgdir, "man", "FooBarPkg.Rd"))
>
> # here is my sessionInfo()
>
> R version 2.7.0 (2008-04-22)
> i686-pc-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
> [1] Biobase_2.0.1
>
> 	[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor

-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M2 B169
Phone: (206) 667-2793