[BioC] Building BioC 2.2 with R 2.7.0

[Atro Tossavainen]

I've successfully built R 2.7.0 for x86 Linux (RHEL4), x86_64 Linux
(RHEL4), Solaris 8 SPARC and IRIX 6.5.  The Bioconductor installation
process works fine on x86_64 Linux and IRIX.

Building annaffy fails on x86 Linux, and building annaffy and simpleaffy
fail on Solaris 8.  In both cases, the annaffy error message is as follows:

Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Error in sqliteExecStatement(con, statement, bind.data) : 
  RS-DBI driver: (error in statement: no such table: metadata)
Error : .onLoad failed in 'loadNamespace' for 'GO.db'
Error: package 'GO.db' could not be loaded
Execution halted
ERROR: lazy loading failed for package 'annaffy'
** Removing '/.../R/2.7.0/lib/R/library/annaffy'


The simpleaffy installation attempt ends with:

Loading required package: splines
Error in dyn.load(file, DLLpath = DLLpath, ...) : 
  unable to load shared library '/.../R/2.7.0/lib/R/library/genefilter/libs/genefilter.so':
  ld.so.1: /.../R/2.7.0/lib. at sys/R/bin/exec/R: fatal: relocation error: file /.../R/2.7.0/lib/R/library/genefilter/libs/genefilter.so: symbol __1cDstdJexceptionG__vtbl_: referenced symbol not found
Error: package 'genefilter' could not be loaded
Execution halted
ERROR: lazy loading failed for package 'simpleaffy'
** Removing '/.../R/2.7.0/lib/R/library/simpleaffy'

All help appreciated.

-- 
Atro Tossavainen (Mr.)               / The Institute of Biotechnology at
Systems Analyst, Techno-Amish &     / the University of Helsinki, Finland,
+358-9-19158939  UNIX Dinosaur     / employs me, but my opinions are my own.
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