[BioC] Processing data from Illumina HumanCNV370-Quad chips
smckinney at bccrc.ca
Thu Nov 13 22:53:06 CET 2008
Has anyone processed data from Illumina
HumanCNV370-Quad chips using Bioconductor
or other open source software?
I've started attempts to read data using
but have not had luck yet.
> SNPdata <- read.SnpSetIllumina("Gulisa_CNV370SampleSheet_8samples.csv")
Error in read.SnpSetIllumina("Gulisa_CNV370SampleSheet_8samples.csv") :
Sample sheet error, column(s) Sentrix_Position, Pool_ID, Sentrix_ID are not available
I'm pouring through documentation, but as yet
have not seen references to this chip type, so
am wondering if I just don't have things set up
just right as yet, or whether the current software
is not yet ready to deal with data from this
I don't see any references to this chip type
in the mail archives.
Any feedback appreciated.
Molecular Oncology and Breast Cancer Program
British Columbia Cancer Research Centre
email: smckinney +at+ bccrc +dot+ ca
tel: 604-675-8000 x7561
675 West 10th Ave, Floor 4
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