[BioC] human exon array 1.0ST, exonmap, exon.pmcdf troubles

Tobias Straub tstraub at med.uni-muenchen.de
Wed Nov 26 19:13:09 CET 2008


Hi!

for the first time i am working on the affy human exon array and when  
using 'exonmap' and the exon.pmcdf i get the following error when  
calling rma

 > x.rma <- rma(raw.data)
Error in .local(object, ...) : subscript out of bounds

 > sessionInfo()
R version 2.8.0 Patched (2008-11-15 r46953)
i386-apple-darwin9.5.0

locale:
en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] splines   tools     stats     graphics  grDevices utils      
datasets  methods   base

other attached packages:
[1] exon.pmcdf_1.1     exonmap_2.0.0      RMySQL_0.6-1       DBI_0.2-4
[5] RColorBrewer_1.0-2 genefilter_1.22.0  survival_2.34-1    affy_1.20.0
[9] Biobase_2.2.1

loaded via a namespace (and not attached):
[1] AnnotationDbi_1.4.2  RSQLite_0.7-1        affyio_1.10.1         
annotate_1.20.1
[5] preprocessCore_1.4.0

any suggestions anyone?
thanks in advance
Tobias
----------------------------------------------------------------------
Tobias Straub   ++4989218075439   Adolf-Butenandt-Institute, München D



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