[BioC] RBGL installation issues

Robert Gentleman rgentlem at fhcrc.org
Tue Oct 7 02:49:48 CEST 2008

Hi Iain,
  Probably the reason for no response is that you have not given 
sufficient details for anyone to help.

   Did you use biocLite, and if so, could you show us a bit more than 
you are? And if you did not - would you please try that, as it is the 
recommended route.

  best wishes

Iain Gallagher wrote:
> Hi 
> I posted this a few hours ago on the R-help list but have had no replies. I thought it might be better here. Apologies for cross posting.
> I'm trying to install the RBGL package in order to install GOstats. However I am getting
> the following error; can anybody shed some light on what I'm missing?
> /usr/lib/gcc/i486-linux-gnu/4.1.2/../../../../include/c++/4.1.2/cstdlib:135: error: ‘::system’ has not been declared
> Thanks.
> Iain
>> sessionInfo()
> R version 2.7.2 (2008-08-25) 
> i486-pc-linux-gnu 
> locale:
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base     
> loaded via a namespace (and not attached):
> [1] tcltk_2.7.2 tools_2.7.2
> 	[[alternative HTML version deleted]]
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Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
rgentlem at fhcrc.org

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