[BioC] Bioconductor Digest, Vol 68, Issue 7

Matt Settles mattsettles at gmail.com
Tue Oct 7 17:12:10 CEST 2008


Oligo, oligoClasses and pdInfoBuilder are undergoing some major upgrades 
for analysis of Nimblegen data (expression and tiling), they likely will 
not be available with this October release of Bioconductor but will be a 
part of the development version. In the meantime you can contact me 
directly and I can provide you the functions you need to get going, such 
as to read pair files.

Matt Settles
Bioinformatics Core,
Washington State University

> Hi,
> I am postdoc working with genome wide gene expression using Poplar
> oligonucleotide Nimblgen array. I am beginner in R and bioconductor. I have
> Nimblgen raw data in .pair file format. I dont know how to use that using
> Oligo vignette which is available in bioconductor. How to have input file in
> R format from .pair files?
> Thanks
> Dhriaj
> -- 
> Dhiraj Naik
> Postdoctoral Research Associate

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