[BioC] Nimblegen expression dataset(.xys or.pair files/folders)

Joern Toedling toedling at ebi.ac.uk
Thu Oct 9 14:25:45 CEST 2008

a mouse expression data set in NimbleGen's ftr format can also be found 
in the ArrayExpress data base,
The experiment data has the identifier E-TABM-183 and the array platform 
can be found under A-MEXP-607.
For converting the ftr into xys files, you can use the function ftr2xys 
from package "Ringo".

Dhiraj Naik wrote:
> Hi,
> There are couple of dataset of Affymatrix arrays to expereince BioC
> applications, but not for Nimblegen. I searched a lot. I haven't found
> any. I would like to know whether there is any free Nimblegen expression
> data available in.pair or.xys file format to use BioC package.. I searched
> GEO database of NCBI. There is Populus gene expression dataset in .ftr
> format in GEO database. How do I convert such. ftr to.pair or.xys file
> format.?
> Thanks
> Dhiraj Naik
> Postdoctoral Research Associate
> 	[[alternative HTML version deleted]]
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