[BioC] GO Term2entrezgene
sdavis2 at mail.nih.gov
Mon Oct 13 18:30:34 CEST 2008
On Mon, Oct 13, 2008 at 12:18 PM, Weiwei Shi <helprhelp at gmail.com> wrote:
> I am wondering if I can get a list (x) for BP category of GOTERM whose
> structure is like:
> x$GOTermID1: entrezgene id1, entrezgene id2.....
> x$GOTermID2: entrezgene id1, entrezgene id2.....
> I did not find any pdf which shows me how to get this.
You didn't mention what organism you want or your sessionInfo(), but
assuming human and R-2.7 or later:
x <- as.list(org.Hs.egGO2ALLEGS)
This will give you all the GO terms. You could limit to BP by using
the GO package to find all GOBPOFFSPRING.
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