[BioC] GOstats-compatible annotation package for Helicobacter pylori 26995

Klaus-Peter Pleissner pleissner at mpiib-berlin.mpg.de
Tue Oct 14 18:02:57 CEST 2008

Hi BioC,

in the BioC-mailing list I have read a lot about annotation packages for 
GOstats or topGO. My question is following:
1. Is there already a user-defined GOstats-compatible annotation package 
for Helicobacter pylori 26995  to perform gene enrichment analysis using 
, for instance, hyperGtest ?
2. Which package should I use ? GOstats or topGO or are there others, too ?
3. How to create such new annotation package ? AnnBuilder or other 
R-packages ?

 BTW, for human genes we are using WebGestalt 
(http://bioinfo.vanderbilt.edu/webgestalt/)  to perform gene enrichment 
analysis, but WebGestalt doesn't run for bacterial gene lists.

Thanks for hints or advices!

Mit freundlichen Grüssen / Best regards

Dr. Klaus-Peter Pleissner
Max Planck Institute for Infection Biology
Core Facility Bioinformatics
Charitéplatz 1
D-10117 Berlin

*Phone:* +49-30-28460-119
*Fax:*   +49-30-28460-507
*URL:*   http://web.mpiib-berlin.mpg.de/bioinformatik <http://web.mpiib-berlin.mpg.de/bioinformatik/>
*Email:* pleissner at mpiib-berlin.mpg.de  <mailto:pleissner at mpiib-berlin.mpg.de>

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