[BioC] normalizing 200+ U133-2 arrays by MAS5.

Wei,Caimiao caiwei at mdanderson.org
Sat Oct 18 04:34:12 CEST 2008

Dear all,

I can use justRMA to read in 200+ U133_2 .Cel files and normalize at once on a sparc-sun-solaris2.9. with R version 2.7.0 (2008-04-22).

I thought justMAS would be able to do similar task.  But to use justMAS, we need to have an affybatch object first. read.affybatch fails with 100 arrays (can not allocate enough memory).

are there other options to normalize 200+ U133-2 arrays all at once by MAS5?



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