[BioC] Getting dChip SNP intensity in BioC?

Jeff Gentry jgentry at jimmy.harvard.edu
Thu Sep 25 21:25:30 CEST 2008


Hi there ...

I'm probably just overlooking something obvious, but I didn't see this in
the oligo package.  I was hoping to be able to generate the signal
values for samples in SNP datasets in the same manner as dChip &
genepattern do.  As an example, the Genepattern .SNP file format each
sample has both an intensity and a call column.  

Thanks
-J



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