[BioC] Up- or down- regulated pathways or GO terms?

[michael watson (IAH-C)]

KEGGSOAP is also an excellent package for colouring pathways by numerical values.
I have some demo code for that if you need it

Mick


-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch on behalf of Marc Carlson
Sent: Mon 06/04/2009 6:05 PM
To: ss
Cc: BioC
Subject: Re: [BioC] Up- or down- regulated pathways or GO terms?
 
Hi Allen,

You might want to look at the GOstats and Category packages.

http://www.bioconductor.org/packages/devel/bioc/html/GOstats.html

http://www.bioconductor.org/packages/devel/bioc/html/Category.html

These packages are meant to be used after you have some genes that you
feel are interesting (possibly based on results from a microarray
experiment).


  Marc




ss wrote:
> Hi all,
>
> I wonder whether there is any tool which can demonstrate up- or down-
> regulation
> of pathways or GO terms in a plot when doing microarray analysis?
>
> Thanks a lot!
>
> Allen
>
> 	[[alternative HTML version deleted]]
>
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