[BioC] HuGene-1_0-st-v1.r4.pgf

cstrato cstrato at aon.at
Tue Apr 7 21:34:29 CEST 2009

Dear Mayte

Martin was already so kind to answer your question where to find the 
Affymetrix files.

In general you can select any array you want from:

Thus, when selecting HuGene array you can download all necessary files from:

Furthermore, you can select the annotation files for e.g. na28 from:

Please note that release 4 (r4) of the HuGene array converts it to an 
exon array, see:

Best regards
C.h.r.i.s.t.i.a.n   S.t.r.a.t.o.w.a
V.i.e.n.n.a           A.u.s.t.r.i.a
e.m.a.i.l:        cstrato at aon.at

Mayte Suarez-Farinas wrote:
> Hi,
> I am trying to use xps to work with HuGene 1.0
> I have already ROOT and xps and I am following
> their code to create the root scheme. The use of this packages are
> more laborious that the annotation "ways' for other affychip,
> but I am doing by best. For what I understand
> I have to download  HuGene-1_0-st-v1.r4.clf,HuGene-1_0-st- 
> v1.na28.hg18.transcript.csv
> and  HuGene-1_0-st-v1.r4.pgf form Affywebsite. I was able to find the  
> first two but not the
> last one. ie: HuGene-1_0-st-v1.r4.pgf
> any help??
> scheme.hugene10stv1r3.na27 <- import.genome.scheme 
> ("Scheme_HuGene10stv1r4_na28",filedir=scmdir,
>                                paste(libdir,"HuGene-1_0-st- 
> v1.r4.clf",sep="/"),
>                                paste(libdir,"HuGene-1_0-st- 
> v1.r4.pgf",sep="/"),
>                                paste(anndir,"HuGene-1_0-st- 
> v1.na28.hg18.transcript.csv",sep="/"))
> Mayte
> 	[[alternative HTML version deleted]]
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